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Recomendation for a note taking app

Hello everyone, I'd like your recommendations for a note taking app that:

  • Can be selfhosted
  • Stores the notes as plain text or *.md files, not some SQL database.
  • Can use Marddown format.
  • Have an android client or at least a mobile optimized web-interface.
  • Not a must but it would be nice to have a to-do list option.

I tried:

  • Trilium: use an encrypted litesql to store the notes.
  • Joplin: does not encrypt the notes, but store them in random named directories, making ot harder finding the notes.
  • Logseq: No firefox support, I did not check how it stores itsdatabase.
  • Standard note: Needs subscription to selfhost or to even use markdown format, otherwise it is a heavy text editor.
  • Memos: does not store plain files, instead uses a (sqlite probably) database even when setting local filesystem as current object storage.
  • CodiMD: use database to store its notes
  • Hedgedoc: the same as above
  • Silverbulet.md: This is what I will end up using if Obsidian + syncthing was not for me,It is minimal without losing much features and can be enhanced with plug-ins. . It does need a bit of getting used to and it does not have an android app but can it can be run as PWA that runs offline. The only downside is it does clutter your note directory with a bunch of dot files (if you decided to install plug-ins).

The closest I found so far is Obsidian, which:

  • Unfortunately, does not have any selfhosting option.
  • Have a client app on every platform and store.
  • Can use a custom directory to store it database as plain text files, which can be a network mounted directory (on my laptop/desktop) or a directory on my android phone that i will have to keep synchronized using a third party app.
  • I used "Remotely Save by fyears" which allows you to synchronize local obsidian note directory with a cloud directory (onedrive, dropbox, webdav...), It requires webdav for self-hosted options, kinda forcing you to use a 3th party service to run a 3rd party plug-in so you can use Obsidian with your home server directory. On top of that It can only use a folder on the root of the webdave server (say /notes instead of /documents/notes).
  • I used syncthing initially to sync my Notes directory but I ended up using it to keep a buch of directories in sync across all my devices. Leaving you to use whatever app you like on any device, not just Obsidian.

Edit: March-2nd: added memos, codimd, hedgedoc Edit: March-9th, It has been a busy week and I could not do much. I added silverbullet and both syncthing adn remotly-save for obsidian. I'm using now Silverbullet and Obsidian+syncthing until I decide on one. Thank you everyone who helped me choosing.

87 comments
  • I use Obsidian, you have mentioned it and it’s not self hosted, but for me that depends on how you look at it. I use it in a folder that’s synced to Nextcloud, so I consider the data self hosted markdown files. The viewer, i.e. the Obsidian app is not self hosted, but I consider that just a client used to view the data so it doesn’t really bother me.

  • I already replied to a different thread, but figured I'd comment on some of the other options too. My vote is for Silverbullet, but I've tried way too many note taking tools.

    • Joplin: I ran into multiple syncing issues that caused data loss and large numbers of conflicted files. I'm pretty sure these were all fixed a long time ago, but it was annoying. The dev was always good about fixing issues when they came up. It takes forever to sync on my devices and only syncs while the app is open with the screen on. The format it exports markdown files in isn't standard, so I had to write my own scripts to export from joplin to markdown and preserve metadata.
    • Standard Notes: I was willing to pay for this, but it's extremely slow. Their support said it's because it loads everything into memory, which I'd expect to be terrible on mobile with large databases. It's also pretty limited in what you can do on the free self-hosted version.
    • Obsidian: I really like obsidian's ui/ux, and my only complaint is that it's not OSS. I'd even be happy if they offered a self-hosted sync solution. There are some third party solutions for syncing, but they aren't as smooth as the paid sync.
    • Trillium: I love Trillium. I would vote for it, but it recently entered into maintenance mode. The community is working to start a new fork and I'm sure it will be great, but it's too new to know where things will go yet. Trilium lets you encrypt specific notes and also has a cool plugin system where the plugin scripts are just notes in the database. It does have a mobile interface, but it's a bit limited compared to the desktop interface and also doesn't have an option to sync notes to use offline.
    • Silverbullet: My current choice. I use it between windows, macos, and an android phone. I leave all three clients on sync mode all the time. The interface is minimalistic, but offers everything I need for notes and documentation so far. One of the rare "markdown" tools that actually save your content to markdown files and not to a database with the ability to export to markdown. It also has a cool feature built in where it indexes all of your notes/tasks/paragraphs and lets you build queries around them sort of like the dataview plugin for obsidian.
    • Emacs: I haven't seen emacs mentioned yet, but emacs+org-mode is still great. The mobile apps just don't live up to the desktop experience, and you'd still have to figure out how to sync your notes yourself. Logseq's outliner format is a similar feel afaict
  • For the past many years I've simply synced my notes across devices (originally from webDAV, currently Syncthing) and open them with my favourite Markdown editor for each platform. On my android phone it's Markor, and Marktext on desktop.

    I've tried so many note taking apps but especially Joplin's weird renaming of my files cooled my enthusiasm for One App To Rule Them All. I do understand the attraction of it, I just prefer a simple setup where I'm not bound by any developer (team)’s whims.

    • I just prefer a simple setup where I’m not bound by any developer (team)’s whims.

      This is my concern, if anything goes wrong with my favorite app I would just move on to another without much fuss.

  • Another vote for Obsidian. I use it with the remotely-save plugin via WebDav and Nextcloud - completely self-hosted, I haven’t even made an Obsidian account. Sync conflicts are very rare, I’m using it on iOS and four desktops. While I wish it was OSS, nothing I’ve looked at even comes close to the flexibility of Obsidian. I’m using it for daily notes, habit tracking, task lists, and most recently to write a book.

  • Check out SiYuan. It's an open source, self hostabole version of Obsidian.

    It uses a database on the backend but editing is done in Markdown and it can import / export Markdown files.

87 comments