Raw qemu at the command line for the one I use on a daily basis (not recommended for the average user). VirtualBox if I need to spin something up quickly but don't expect to need to keep it past the current testing cycle.
Virtualbox is slow and the licensing for guest addons is nasty. It is proprietary of course and if a person in a company uses it unlicensed they will send the company a massive invoice.
I only need it for the very occasional testing of open-source software on Windows, using the precanned VM images provided by Microsoft (last I checked, they had none for qemu, or I would be using that instead). And if you're using software commercially, you'd better be damned sure you understand the licensing before setting up. A company of any size will have lawyers vetting that anyway.
In other words, I don't disagree with you, but those issues don't matter for my use case.